Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs150178133 chr8:103163756 T/TGCC 0.000169 128 42.18 41.2 24.43 KM Plot
TGCT rs1546252 chr5:1796520 C/T 4.04E-7 133 42.27 45.83 20.6 KM Plot
TGCT rs1546253 chr5:1796564 C/T 4.04E-7 133 42.27 45.83 20.6 KM Plot
TGCT rs1549071 chr14:78172449 C/T 4.42E-9 128 45.47 37.5 9.32 KM Plot
TGCT rs1554090 chr16:27807751 C/T 1.04E-5 133 46.53 33.55 17.27 KM Plot
TGCT rs1555046 chr6:28329037 C/G 0 134 45.83 29.65 0.57 KM Plot
TGCT rs1555047 chr6:28328683 C/T 0 134 45.83 29.65 0.57 KM Plot
TGCT rs1568588 chr3:172465874 G/A 9.33E-5 132 25.8 37.42 42.27 KM Plot
TGCT rs16853856 chr1:14576548 C/G 8.86E-7 133 42.27 28.8 0.57 KM Plot
TGCT rs16864244 chr2:177559166 A/T 0 128 45.93 36.63 0.57 KM Plot
TGCT rs16864246 chr2:177559549 G/A 0 128 45.93 36.63 0.57 KM Plot
TGCT rs16869009 chr8:103084695 C/T 0.000111 134 42.1 36.1 48.45 KM Plot
TGCT rs16872670 chr5:74929312 G/A 8.14E-5 133 46.07 25.77 5.33 KM Plot
TGCT rs16887886 chr8:116910767 T/C 7.41E-7 134 45.7 28.7 18.83 KM Plot
TGCT rs16899748 chr8:125585547 G/A 1.92E-5 132 41.97 46.77 22.68 KM Plot